Man pages for jameshay218/antibodyKinetics
antibodyKinetics

add_noiseAdd noise to a titre observation
calc_devianceDeviance
calc_post_meanPosterior mean
calc_post_varPosterior variance
calculate_BICBIC calculation
calculate_DICDIC
calculate_WAICWAIC using the pwaic2 in Gelman 2013
calculate_xAntigenic distance calc
convert_options_to_runNameConvert options to runName
convert_runName_to_optionsConvert runName string
create_model_funcCreate model function pointer
create_model_group_funcCreate model function pointer groups
create_model_group_func_cppCreate model function pointer cpp implementation
exampleExposureTabExample Exposure Table Exposure input table used to generate...
exampleParTabExample Parameter Table
exposure_timesExposure times group Experimental group index exposure...
ferret_titresFerret titre data group Experimental group index strain...
fromUnitScaleConverts to linear scale
generate_prediction_intervalsGenerate prediction intervals from MCMC chain
get_best_parsFind best MCMC chain parameters
model_funcModel solver for one group
model_func_group_cppModel calculation cpp implementation
model_func_groupsMultiple group model trajectory
model_trajectoryModel trajectory calc
model_trajectory_cppModel trajectory calc cpp
mvr_proposalMultivariate proposal function
norm_errorDiscretised normal error
obs_errorObservation error matrix solver
obs_likelihoodObservation error function
parameter_descriptionsDescribe model parameters
parTab_modificationModify parameter table
posterior_func_group_cppPosterior calculation cpp implementation
protectProtect function
read_ferret_dataRead in ferret data
run_MCMCAdaptive Metropolis-within-Gibbs Random Walk Algorithm.
scaletuningScale step sizes
toUnitScaleConverts to unit scale
univ_proposalMCMC proposal function
jameshay218/antibodyKinetics documentation built on Sept. 1, 2018, 9:52 a.m.