create_data: Create simulated titre data

In jameshay218/antibodyKinetics: antibodyKinetics

Description

Generates simulated observed antibody titre data from the given parameter and exposure table files, along with selected kinetics options.

Usage

create_data(runName, runID, parTab_file, exposureTab_file, ngroup = 5,
  nstrain = 5, nindiv = 3, times,
  wd = "~/net/home/ferret/inputs/data_normal", group = NA,
  strain = NA, normal = TRUE, pars = NULL)

Arguments

runName	the simulation name to save data under
runID	run ID to append to the front of the filename
parTab_file	file location of the parameter table to simulate from
exposureTab_file	file location of the exposure table to simulate from
ngroup	how many groups to simulate? Make sure that this matches the dimensions of exposureTab_file
nstrain	how many strains to simulate?
nindiv	how many individuals to simulate data for for each group/strain combination
times	vector of times in days at which titres should be measured
wd	working directory to save simulated data to
group	if only one group to be simulated, subset exposureTab for this group
strain	if only one strain to be simulated, subset exposureTab for this strain
normal	if TRUE, adds normally distributed measurement error
pars	vector of parameter values to simulate from. If NULL, just uses those values in the read in parTab

Value

a list with the simulated data, the residuals between true simulated data and observed simulated data, the file location of saved simulated data

jameshay218/antibodyKinetics documentation built on Nov. 8, 2019, 11 a.m.