exampleParTab: Example Parameter Table

In jameshay218/antibodyKinetics: antibodyKinetics

Description

Parameter input table used to generate trajectories for a model with the following properties:

• 5 experimental groups

• 5 influenza strains being tracked (A-E)

• Competitive interactions of multiple exposures

• Antigenic seniority present

• Type-specific cross reactivity parameters

• Impact of priming infection subsequent vaccine response

• 6 distinct exposure types

• Bi-phasic antibody waning

• No titre-dependent boosting

Usage

data(exampleParTab)

Format

An object of class "data.frame"

Details

Each row corresponds to a parameter in the model. Columns of the parameter table are as follows:

names

name of the parameter, see parameter_descriptions()

id

Which exposure ID does this parameter correspond to? This will be "all" for most model variants

values

Value of this parameter

type

If using type-specific parameters, which exposure type does this parameter correspond to? either infection, vacc or adj if 3 types, or infection1, infection2, vacc1, vacc2, adj1, adj2 if using 6 types.

exposure

f using exposure-strain specific interactions, which strain is in this exposure?

strain

If using exposure-strain specific interactions, which observed strain are we currently describing?

order

only corresponds to the "mod" parameters, with 1 being first exposure and 4 being the 4th exposure

fixed

1 if this is a fixed parameter, 0 if to be estimated in the MCMC procedure

steps

initial step size for the univariate MCMC sampler

lower_bound

lower allowable bound for this parameter

upper_bound

upper allowable bound for this parameter

jameshay218/antibodyKinetics documentation built on Nov. 8, 2019, 11 a.m.