exampleExposureTab: Example Exposure Table Exposure input table used to generate...

Description Usage Format Details

Description

Each row corresponds to an observable antibody titre trajectory in the model. Columns are as follows:

Usage

1

Format

An object of class "data.frame"

Details

id

Unique identifier describing which group (G), exposure number (E) and exposure strain (S) this row corresponds to

values

Time in days of this exposure

type

If using type-specific parameters, which exposure type does this parameter correspond to? either infection, vacc or adj if 3 types, or infection1, infection2, vacc1, vacc2, adj1, adj2 if using 6 types.

exposure

f using exposure-strain specific interactions, which strain is in this exposure?

strain

If using exposure-strain specific interactions, which observed strain are we currently describing?

order

Which number exposure is this, starting from 1 (ie. the nth exposure)

primed

1 if this is a vaccination following priming infection, 0 otherwise

group

Which experimental group does this exposure correspond to?

end

At what time in days does the experimental protocol end?

next_t

Time at which the next exposure in this experimental group occurs


jameshay218/antibodyKinetics documentation built on Nov. 8, 2019, 11 a.m.