calculate_lik_matrix: Calculate per data point likelihood matrix

In jameshay218/antibodyKinetics: antibodyKinetics

Description

From the output of an MCMC chain, calculates the likelihood of observing each data point. This can then be used in loo::loo

Usage

calculate_lik_matrix(chain, parTab, dat, f, N, nindiv = 3,
  generate_labels = TRUE)

Arguments

chain	the MCMC chain with each row corresponding to an iteration
parTab	the parameter table used for this chain
dat	the data frame of data used to solve the likelihood
f	pointer to the model function used in the MCMC procedure
N	number of samples to take from the MCMC chain
nindiv	the number of individuals in each group/strain combination
generate_labels	if TRUE, generates labels to match each estimated k value to the correct data point. This only works if using data with an experimental design matching the protocol

Value

a matrix of same dimensions as dat

jameshay218/antibodyKinetics documentation built on Nov. 8, 2019, 11 a.m.