plot_best_trajectory_single: Plot single best trajectory

In jameshay218/zikaProj: zikaInfer

Description

For a given run name and state, plots the best zika and microcephaly incidence plot

Usage

plot_best_trajectory_single(local, chain = NULL, realDat = NULL,
  parTab = NULL, ts = NULL, runs = 100, incDat = NULL, ylabel = TRUE,
  xlabel = TRUE, mcmcPars = c(burnin = 50000, adaptive_period = 1e+05, thin
  = 50), ylimM = NULL, ylimI = NULL, startDay = NULL, months = NULL,
  weeks = NULL, xlim = NULL)

Arguments

local	the name of the state to be fitted
chain	the MCMC chain to use
realDat	the data frame of real data that was fitted to
parTab	the parameter table as returned by setupParTable
ts	vector of time parameters
runs	the number of runs to use for prediction intervals
incDat	incidence data set, if to be included in the plot
ylabel	boolean whether or not to add y axis label
xlabel	boolean whether or not to add x axis label
mcmcPars	a named vector of the burnin, adaptive period and thinning
ylimM	ylimit for the microcephaly plot
ylimI	ylimit for the incidence plot
startDay	if realDat is not provided, need to provide the first day on which we want to see predicted microcephaly numbers
months	if realDat not provided, need to provide the number of months of forecasted data that we wish to see
weeks	if no incidence data provided, number of weeks over which we should plot the data
xlim	OPTIONAL x coordinate limits

Value

a ggplot object with the incidence plots

jameshay218/zikaProj documentation built on Jan. 9, 2020, 7:26 p.m.