generateWorkflow: Generate a workflow project directory
In jasenfinch/metaboWorkflows: Workflow Project Templates for Metabolomics Analyses

generateWorkflow

R Documentation

Generate a workflow project directory

Description

Generate a workflow project directory from a workflow definition.

Usage

generateWorkflow(workflow, start = TRUE)

## S4 method for signature 'Workflow'
generateWorkflow(workflow, start = TRUE)

Arguments

`workflow`	S4 object of class `Workflow`
`start`	TRUE/FALSE. Automatically activate the project in a new RStudio session after creation

Examples

## Not run: 
file_paths <- metaboData::filePaths('FIE-HRMS','BdistachyonEcotypes')
sample_information <- metaboData::runinfo('FIE-HRMS','BdistachyonEcotypes')

workflow_input <- inputFilePath(file_paths,sample_information)

workflow_definition <- defineWorkflow(workflow_input,
                                      'FIE-HRMS fingerprinting',
                                      'Example project')
                                      
generateWorkflow(workflow_definition)

## End(Not run)

jasenfinch/metaboWorkflows documentation built on Feb. 26, 2023, 3:34 a.m.