inputGrover: Workflow input using a grover API

In jasenfinch/metaboWorkflows: Workflow Project Templates for Metabolomics Analyses

Workflow input using a grover API

Description

Use .mzML files retrieved from a grover API for workflow input.

Usage

inputGrover(instrument, directory, host, port, auth)

Arguments

instrument	analytical instrument name
directory	experiment directory name
host	grover API host address
port	grover API host port
auth	grover API host authentication code

Details

This specifies the retrieval of sample data files and information using a grover API. See grover for more information about mass spectral data retrieval from a grover API.

Value

An S4 object of class GroverInput

Examples

workflow_input <- inputGrover(instrument = 'An_instrument',
                              directory = 'Experiment_directory',
                              host = 'a.grover.host',
                              port = 80,
                              auth = '1234')

workflow_input

jasenfinch/metaboWorkflows documentation built on May 24, 2023, 8:23 a.m.