inputFilePath: Workflow input using file paths
In jasenfinch/metaboWorkflows: Workflow Project Templates for Metabolomics Analyses

inputFilePath

R Documentation

Workflow input using file paths

Description

Use file paths to .mzML data files for workflow input.

Usage

inputFilePath(file_paths, sample_information)

Arguments

`file_paths`	character vector of .mzML file paths
`sample_information`	a tibble containing sample information. See details for specifications

Details

The tibble containing sample information should at least contain the following columns:

fileOrder - the numeric file order of the input files when order alphabetically as returned by list.files().
injOrder - the sample injection order during MS analysis
fileName - the sample file name
batch - the analytical batch number
block - the randomised block number
name - the sample name
class - the sample class name

Value

An S4 object of class FilePathInput.

Examples

file_paths <- metaboData::filePaths('FIE-HRMS','BdistachyonEcotypes')
sample_information <- metaboData::runinfo('FIE-HRMS','BdistachyonEcotypes')

workflow_input <- inputFilePath(file_paths,sample_information)

workflow_input

jasenfinch/metaboWorkflows documentation built on May 24, 2023, 8:23 a.m.