getTypesInRoiTable: Returns a neuronBag object of all the neurons forming...

In jayaraman-lab/neuprintrExtra: Extra functions to analyze neuprint EM datasets

Description

Returns a neuronBag object of all the neurons forming significant connections in a ROI.

Usage

getTypesInRoiTable(
  ROI,
  renaming = cxRetyping,
  bagROIs = ROI,
  minTypePercentage = 0.5,
  retyping = NULL,
  ...
)

Arguments

ROI	The ROI to consider
renaming	a renaming function to be applied to the types found. cxRetyping by default (for no renaming, set it to NULL)
bagROIs	Which ROIs to include in the bag created (by default only the ROI one wants neurons in). If NULL returns all ROIs.
minTypePercentage	The minimum proportion of the instances of a type that should be innervating the ROI for it to be considered (0.5 by default)
...	Parameters to be passed to neuronBag

Details

calls getNeuronsInRoiTable internally.

See Also

getNeuronsInRoiTable

jayaraman-lab/neuprintrExtra documentation built on Dec. 20, 2021, 10 p.m.