selectRoiSet: Select a set of ROIs from a ROI hierarchy as the one...

In jayaraman-lab/neuprintrExtra: Extra functions to analyze neuprint EM datasets

Description

Select a set of ROIs from a ROI hierarchy as the one generated by getRoiTree

Usage

selectRoiSet(
  roiTree = getRoiTree(),
  default_level = 2,
  exceptions = NULL,
  exceptionLevelMatch = default_level
)

Arguments

roiTree	A ROI hierarchy table as returned by getRoiTree
default_level	An integer specifying which ROI level to use by default
exceptions	A list of the form list(nameOfRoi = level) where nameOfRoi is the name of ROIs at level exceptionLevelMatch for which one want to use a different level of description
exceptionLevelMatch	What level to use in the exceptions list. Can be either a scalar or a vector the same length as exceptions

Value

a data.frame with the same columns as those returned by getRoiTree with an extra roi column containing the desired set

See Also

getRoiTree

jayaraman-lab/neuprintrExtra documentation built on Dec. 20, 2021, 10 p.m.