haneschPlot: Plot a hanesch type plot based on a summary of ROI...

In jayaraman-lab/neuprintrExtra: Extra functions to analyze neuprint EM datasets

Description

Plot a hanesch type plot based on a summary of ROI innervation

Usage

haneschPlot(
  roiTable,
  roiSelect = selectRoiSet(getRoiTree()),
  grouping = NULL,
  flip = FALSE,
  alphaRois = 0.15,
  roiLabel = selectRoiSet(getRoiTree(), default_level = 0),
  regionOutlines = TRUE,
  theme = theme_minimal(),
  interactive = FALSE,
  showCount = FALSE
)

Arguments

roiTable	A table of ROI innervation, as generated by getROISummary
roiSelect	A selection of ROIs table, as generated by selectRoiSet
grouping	A string of grouping variable(s) of roiTable to facet the plot on. Will usually be one of the supertype columns
flip	Flip the x/y axis? If TRUE, types will be on the bottom axis and ROIs on the side axis
alphaRois	The alpha of the color rectangles coding the ROIs
roiLabel	A selection of ROIs, as generated by selectRoiSet to be used for the ROI color guide
regionOutlines	Whether or not to add the ROI color code
theme	Theme to be passed to ggplot2
interactive	Whether or not to use some interactivity from ggiraph
showCount	Whether or not to print the number of instances in the type in the tick labels

jayaraman-lab/neuprintrExtra documentation built on Dec. 20, 2021, 10 p.m.