neuron2polygon: Transforms a nat neuron object into a polygon that can be...

In jayaraman-lab/neuprintrExtra: Extra functions to analyze neuprint EM datasets

Description

Transforms a nat neuron object into a polygon that can be plotted in 2D

Usage

neuron2polygon(neur, axis = c("x", "y"), progress = TRUE, cl = 10L)

Arguments

neur	A neuron or neuronList object
axis	Which axis do we want to project onto. Has to be a length 2 vector of "x", "y" or "z"
progress	When applied to neuronLists, whether to display a progress bar
cl	A cluster parameter, can be either an integer or a cluster object (see pbapply::pbapply)

Value

a dataframe with columns x, y, proj and bodyid. If neur is a neuronlist there will be several bodyids.

jayaraman-lab/neuprintrExtra documentation built on Dec. 20, 2021, 10 p.m.