View source: R/Lib_MapAlphaDiversity.R
convert_PCA_to_SSD | R Documentation |
Convert PCA into SSD based on previous clustering
convert_PCA_to_SSD(
ReadWrite,
Spectral_Species_Path,
HDR_SS,
HDR_SSD,
HDR_Sunlit,
window_size,
nbclusters,
Input_Mask_File = FALSE,
HDR_Mask = FALSE,
MinSun = 0.25,
pcelim = 0.02,
Index_Alpha = c("Shannon"),
SSD_Path,
Sunlit_Path,
p = NULL,
nbCPU = 1,
nbPieces = 1,
progressbar = FALSE
)
ReadWrite |
list. includes byte coordinates where to read and write from files |
Spectral_Species_Path |
character. path for Spectral_Species raster file |
HDR_SS |
list. HDR file for spectral species |
HDR_SSD |
list. HDR file for spectral species distribution |
HDR_Sunlit |
list. HDR file for spectral species distribution |
window_size |
numeric. window size |
nbclusters |
numeric. number of clusters |
Input_Mask_File |
character. input mask file (useful when using classification map) |
HDR_Mask |
list. HDR file for mask |
MinSun |
numeric. Minimum proportion of sunlit pixels required to consider plot. |
pcelim |
numeric. Minimum contribution (in %) required for a spectral species. |
Index_Alpha |
list. list of spectral metrics to be computed |
SSD_Path |
character. path for spectral species distribution file |
Sunlit_Path |
character. path for sunlit proportion file |
p |
list. progressor object for progress bar |
nbCPU |
numeric. Number of CPUs to use in parallel. |
nbPieces |
numeric. number of pieces to split file read into |
progressbar |
boolean. should progress bar be displayed (set to TRUE only if no conflict of parallel process) |
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