View source: R/Lib_Validation_biodivMapR.R
diversity_from_plots | R Documentation |
gets alpha diversity indicators from plot
diversity_from_plots(
Raster_SpectralSpecies,
Plots,
nbclusters = 50,
Raster_Functional = FALSE,
Selected_Features = FALSE,
Name_Plot = FALSE,
Hellinger = FALSE,
pcelim = 0.02,
FDmetric = c("FRic", "FEve", "FDiv")
)
Raster_SpectralSpecies |
character. path for the SpectralSpecies file computed from DiverstyMapping method |
Plots |
list. list of paths corresponding to shapefiles defining polygons in the raster |
nbclusters |
numeric. Number of clusters defined in k-Means. |
Raster_Functional |
character. path for the raster file used to compute functional diversity |
Selected_Features |
numeric. selected features for Raster_Functional. use all features if set to FALSE |
Name_Plot |
character. Name of the plots defined in the shapefiles |
Hellinger |
boolean. set TRUE to compute Hellinger distance matrices based on Euclidean distances |
pcelim |
numeric. Discard spectral species when contribution is < pcelim (between 0 and 1) |
FDmetric |
character. Functional diversity metric |
alpha and beta diversity metrics
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