parse_ordination: Parse an imported q2 ordination text file

Description Usage Arguments Value Examples

View source: R/parse_ordination.R

Description

Parse an imported q2 ordination text file

Usage

1
parse_ordination(artifact, tmp)

Arguments

artifact

takes an artifact containing the unparsed ordination format (result of readLines)

tmp

the tmp dir for artifact

Value

a data.frame with feature IDs as row names and the columns: Kingdom, Phylum, Class, Order, Family, Genus, Species

Examples

1
## Not run: ord<-parse_ordination(ordination_artifact, tmpdir)

jbisanz/qiime2R documentation built on Nov. 12, 2021, 3:09 p.m.