Gmat2gmt: Transform analyte-by-pathway matrix into list compatible with...

Description Usage Arguments Value

View source: R/Gmat2gmt.R

Description

Transform analyte-by-pathway matrix into list compatible with Gene Matrix Transposed (GMT) file format, described at the Broad Institute.

Usage

1
Gmat2gmt(Gmat)

Arguments

Gmat

A numeric Matrix of features (proteins and/or metabolites) as rows and pathways as columns, indicating pathway membership with positive elements.

Value

A list of analyte sets. Each element has a set name, description, and genes.


jdreyf/PANTS documentation built on July 18, 2019, 10:12 a.m.