Gmat2gmt: Transform analyte-by-pathway matrix into list compatible with...
In jdreyf/PANTS: Pathway analysis via network smoothing
Description
Usage
Arguments
Value
Description
Transform analyte-by-pathway matrix into list compatible with Gene Matrix Transposed (GMT) file format, described at the Broad Institute.
Usage
1
Gmat2gmt(Gmat)
Arguments
Gmat
A numeric Matrix of features (proteins and/or metabolites) as rows and pathways as columns, indicating
pathway membership with positive elements.
Value
A list of analyte sets. Each element has a set name, description, and genes.
jdreyf/PANTS documentation built on July 18, 2019, 10:12 a.m.
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Description Usage Arguments Value
Description
Transform analyte-by-pathway matrix into list compatible with Gene Matrix Transposed (GMT) file format, described at the Broad Institute.
Usage
1 | Gmat2gmt(Gmat)
|
Arguments
Gmat |
A numeric Matrix of features (proteins and/or metabolites) as rows and pathways as columns, indicating pathway membership with positive elements. |
Value
A list of analyte sets. Each element has a set name, description, and genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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