Description Usage Arguments Value
View source: R/score_features.R
Score features using limma_contrasts
or limma_cor
and
then applying score_fcn
to moderated t-statistics. Does not currently accept type=="mediation"
.
1 2 |
object |
Matrix-like data object containing log-ratios or log-expression values, with rows corresponding to features (e.g. genes) and columns to samples. Must have rownames that are non-duplicated and non-empty. |
phenotype |
Vector of sample characteristics (correlation: numeric; contrasts: character).
Should be same length as |
type |
Type of ezlimma analysis per feauture; must be one of"contrasts"
( |
contrast.v |
Named vector of contrasts, passed to |
design |
Design matrix of the experiment, with rows corresponding to samples and columns to coefficients to be estimated. |
score_fcn |
Function that transforms the t-statistics from the contrasts into a non-negative value.
Its input must be a vector of same length as number of elements in |
Named vector of feature scores.
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