sif2edgelist: Clean Pathway Commons SIF file
In jdreyf/PANTS: Pathway analysis via network smoothing
Description
Usage
Arguments
Value
Description
Remove some ubiquitious IDs from Pathway Commons SIF file, and transform to edge-list.
Usage
1
sif2edgelist(sif, rm.ids = "CHEBI:15377")
Arguments
sif
SIF file from Pathway Commons
rm.ids
vector of analyte IDs to remove. Default CHEBI:15377 corresponds to water.
Value
Edge-list matrix with two columns.
jdreyf/PANTS documentation built on July 18, 2019, 10:12 a.m.
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Description Usage Arguments Value
Description
Remove some ubiquitious IDs from Pathway Commons SIF file, and transform to edge-list.
Usage
1 | sif2edgelist(sif, rm.ids = "CHEBI:15377")
|
Arguments
sif |
SIF file from Pathway Commons |
rm.ids |
vector of analyte IDs to remove. Default |
Value
Edge-list matrix with two columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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