Files in jdreyf/PANTS
Pathway analysis via network smoothing

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
PANTS.Rproj
R/Gmat2gmt.R R/SMPDB2Gmat.R R/color_bar.R R/data_pc9.R R/data_smpdb_gmat.R R/diag_kernel.R R/edgeList2graph.R R/gmt2Gmat.R R/graph2kernel.R R/map2color.R R/mat_pow.R R/match_mats.R R/neighbor_nms.R R/p_ecdf.R R/pants.R R/pants_hitman.R R/plot_pwy.R R/score_features.R R/select_ntop.R R/sif2edgelist.R R/subset_gmat.R R/write_pants_xl.R README.md
codecov.yml
data-raw/pc9.R data-raw/smpdb_gmat.R
data/pc9.rda
data/smpdb_gmat.rda
man/Gmat2gmt.Rd man/SMPDB2Gmat.Rd man/color_bar.Rd man/diag_kernel.Rd man/edgelist2graph.Rd man/gmt2Gmat.Rd man/graph2kernel.Rd man/map2color.Rd man/mat_pow.Rd man/match_mats.Rd man/neighbor_nms.Rd man/p_ecdf.Rd man/pants.Rd man/pants_hitman.Rd man/pc9.Rd man/plot_pwy.Rd man/score_features.Rd man/select_ntop.Rd man/sif2edgelist.Rd man/smpdb_gmat.Rd man/subset_gmat.Rd man/write_pants_xl.Rd
tests/figs/color-bar/cb-na.svg
tests/figs/color-bar/cb-nona.svg
tests/figs/deps.txt
tests/figs/plot-pwy/pwy1-ann.svg
tests/figs/plot-pwy/pwy1-less.svg
tests/figs/plot-pwy/pwy1-neg.svg
tests/figs/plot-pwy/pwy1.svg
tests/figs/plot-pwy/pwy2-noker.svg
tests/testthat.R tests/testthat/helper-pants.R tests/testthat/test-Gmat2gmt.R tests/testthat/test-SMPDB2Gmat.R tests/testthat/test-color_bar.R tests/testthat/test-diag_kernel.R tests/testthat/test-gmt2Gmat.R tests/testthat/test-graph2kernel.R tests/testthat/test-map2color.R tests/testthat/test-mat_pow.R tests/testthat/test-match_mats.R tests/testthat/test-p_ecdf.R tests/testthat/test-pants.R tests/testthat/test-pants_hitman.R tests/testthat/test-plot_pwy.R tests/testthat/test-score_features.R tests/testthat/test-select_ntop.R tests/testthat/test-sif2edgelist.R tests/testthat/test-subset_gmat.R tests/testthat/test-write_pants_xl.R vignettes/PANTS-vignette.Rmd
vignettes/PANTS-vignette.html
jdreyf/PANTS documentation built on March 21, 2019, 11:38 p.m.