Description Usage Arguments Author(s) References
This function takes the matrix of sampled seahorse measurements returned by sample_seahorse
and maps the fluxes to metabolic reactions. It returns a matrix with the mapped fluxes of
basal oxygen consumption, mitochondrial oxygen consumption, mitochondrial ATP production,
mitochondrial ATP leak, and basal extracellular acidification
1 | map_seahorse(x, model.nm = c("2.1A", "2.1x", "2.2"))
|
x |
A matrix of sampled seahorse measurements |
model.nm |
The metabolic model name. One of "2.1A", "2.1x", or "2.2". |
Alfred Ramirez, Jonathan Dreyfuss
Ramirez AK, Lynes MD, Shamsi F, Xue R, Tseng YH, Kahn CR, Kasif S, Dreyfuss JM. Integrating Extracellular Flux Measurements and Genome-Scale Modeling Reveals Differences between Brown and White Adipocytes. Cell Rep 2017 Dec; 21(11): 3040-3048.
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