map_seahorse: Map the seahorse fluxes to metabolic reactions

In jdreyf/sybilxf: R package for integration of Seahorse extracellular flux (XF) data with metabolic modeling.

Description

This function takes the matrix of sampled seahorse measurements returned by sample_seahorse and maps the fluxes to metabolic reactions. It returns a matrix with the mapped fluxes of basal oxygen consumption, mitochondrial oxygen consumption, mitochondrial ATP production, mitochondrial ATP leak, and basal extracellular acidification

Usage

map_seahorse(x, model.nm = c("2.1A", "2.1x", "2.2"))

Arguments

x	A matrix of sampled seahorse measurements
model.nm	The metabolic model name. One of "2.1A", "2.1x", or "2.2".

Author(s)

Alfred Ramirez, Jonathan Dreyfuss

References

Ramirez AK, Lynes MD, Shamsi F, Xue R, Tseng YH, Kahn CR, Kasif S, Dreyfuss JM. Integrating Extracellular Flux Measurements and Genome-Scale Modeling Reveals Differences between Brown and White Adipocytes. Cell Rep 2017 Dec; 21(11): 3040-3048.

jdreyf/sybilxf documentation built on May 22, 2019, 4:41 p.m.