summarize_seahorse: Summarize seahorse data by sample and region

In jdreyf/sybilxf: R package for integration of Seahorse extracellular flux (XF) data with metabolic modeling.

Description

This function takes the long format table exported by the XF Wave software for the Mitochondrial stress test and returns a matrix of means and standard deviations for each region of the assay (e.g. basal, oligomycin, fccp, and rotenone). The GroupName column must have the sample names. The final measurement of each region is used for the mean and standard deviation across wells.

Usage

summarize_seahorse(x, injections = c("basal", "oligomycin", "fccp",
  "rotenone"))

Arguments

x	A data.frame
injections	The names of the injections

Author(s)

Alfred Ramirez, Jonathan Dreyfuss

References

Ramirez AK, Lynes MD, Shamsi F, Xue R, Tseng YH, Kahn CR, Kasif S, Dreyfuss JM. Integrating Extracellular Flux Measurements and Genome-Scale Modeling Reveals Differences between Brown and White Adipocytes. Cell Rep 2017 Dec; 21(11): 3040-3048.

jdreyf/sybilxf documentation built on May 22, 2019, 4:41 p.m.