Man pages for jean997/sherlockAsh
CAUSE: Causal Analysis Using Summary Effect Estimates
| cause_grid_approx | CAUSE with grid approximation and fixed rho |
| cause_grid_approx_v7 | CAUSE with grid approximation and fixed rho |
| cause_mh_v7 | Estimate posteriors for version 7 model |
| fit_cause | Fit CAUE |
| get_map | Try to find the MAP using coordinate descent |
| get_map_old | Try to find the MAP using coordinate descent |
| in_sample_elpd_loo | Estimate delta elpd for pairs of models |
| ld_prune_pval_format3 | Rank SNPs by pval, prune for LD |
| ld_prune_pval_format4 | Rank SNPs by pval, prune for LD |
| ll_v4 | Calculate likelihood - version 4 |
| ll_v4_ij | Calculate likelihood of (beta_hat_1[j], beta_hat_2[j])) given... |
| ll_v4_loo | Calculate likelihood matrix for LOO (SNPs by posterior... |
| ll_v4_mat | Calculate likelihood matrix - version 4 |
| ll_v4_single | Calculate likelihood - version 4, not in parallel |
| ll_v6 | Calculate likelihood - version 6 |
| ll_v6_ij | Calculate likelihood of (beta_hat_1[j] beta_hat_2(j)) given... |
| ll_v6_mat | Calculate likelihood matrix - version 6 |
| ll_v7 | Calculate likelihood - version 7 |
| ll_v7_ij | Calculate likelihood of (beta_hat_1[j], beta_hat_2[j])) given... |
| ll_v7_loo | Calculate likelihood matrix for LOO (SNPs by posterior... |
| ll_v7_mat | Calculate likelihood matrix - version 7 |
| ll_v7_samps_Z0 | Calculate likelihood matrix for LOO (SNPs by posterior... |
| ll_v7_samps_Z1 | Calculate likelihood matrix for LOO (SNPs by posterior... |
| map_pi_rho | Try to find the MAP for pi and rho using coordinate descent |
| qqthin | Plot qq-plot from p-values with shading |
| rnormalmix | Simulate from a normal mixture distribution |
| sherlock1 | Calculate Bayes Factor for original Sherlock |
| sherlockAsh | sherlockAsh |
| simulate_summary_statistics | Simulate summary statistics |
| top_snps_pval_ld | Rank SNPs by pval, prune for LD |
| top_snps_pval_ld2 | Rank SNPs by pval, prune for LD |
| top_snps_pval_ld2_new | Rank SNPs by pval, prune for LD |
