top_snps_pval_ld: Rank SNPs by pval, prune for LD
In jean997/sherlockAsh: CAUSE: Causal Analysis Using Summary Effect Estimates
Description
Selects a set of top SNP based on p-value that are in minimal LD
Usage
1
2
top_snps_pval_ld(ld, pvals, pval_thresh = Inf, max_snps = Inf,
ld_thresh = 0.1)
Arguments
ld
list of LD matrices
pvals
Vector of pvalues (optional)
pval_thresh
Maximum pvalue
max_snps
Maximum number of SNPs to retain
ld_thresh
Maximum pairwise correlation between SNPs
jean997/sherlockAsh documentation built on May 18, 2019, 11:45 p.m.
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Description
Selects a set of top SNP based on p-value that are in minimal LD
Usage
1 2 | top_snps_pval_ld(ld, pvals, pval_thresh = Inf, max_snps = Inf,
ld_thresh = 0.1)
|
Arguments
ld |
list of LD matrices |
pvals |
Vector of pvalues (optional) |
pval_thresh |
Maximum pvalue |
max_snps |
Maximum number of SNPs to retain |
ld_thresh |
Maximum pairwise correlation between SNPs |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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