sherlock1: Calculate Bayes Factor for original Sherlock

Description Usage Arguments Value

Description

Calculate Bayes Factor for original Sherlock

Usage

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sherlock1(eqtl_pval, gwas_pval, maf, n1, n2, alpha = 5e-05,
  beta = 5e-04, sigma_a_eqtl = 0.5, sigma_a_pheno = 0.5)

Arguments

eqtl_pval

Vector of p-values for gene expression (length p)

gwas_pval

Vector of p-values for gwas trait (length p)

maf

Minor allele frequences (length p)

n1, n2

sample sizes for eqtl and gwas studies

alpah, beta, sigma_a_eqtl, sigma_a_pheno

Tuning parameters (see Xin et al 2011). Default values are alpha=5e-5, beta=5e-4, sigma_a_eqtl = 0.5, sigam_a_pheno=0.5

Value

log Bayes factor


jean997/sherlockAsh documentation built on May 18, 2019, 11:45 p.m.