Man pages for jean997/sherlockAsh
CAUSE: Causal Analysis Using Summary Effect Estimates

cause_grid_approxCAUSE with grid approximation and fixed rho
cause_grid_approx_v7CAUSE with grid approximation and fixed rho
get_mapTry to find the MAP using coordinate descent
get_map_oldTry to find the MAP using coordinate descent
ll_v4Calculate likelihood - version 4
ll_v4_ijCalculate likelihood of (beta_hat_1[j], beta_hat_2[j])) given...
ll_v4_looCalculate likelihood matrix for LOO (SNPs by posterior...
ll_v4_matCalculate likelihood matrix - version 4
ll_v4_singleCalculate likelihood - version 4, not in parallel
ll_v6Calculate likelihood - version 6
ll_v6_ijCalculate likelihood of (beta_hat_1[j] beta_hat_2(j)) given...
ll_v6_matCalculate likelihood matrix - version 6
ll_v7Calculate likelihood - version 7
ll_v7_ijCalculate likelihood of (beta_hat_1[j], beta_hat_2[j])) given...
ll_v7_looCalculate likelihood matrix for LOO (SNPs by posterior...
ll_v7_matCalculate likelihood matrix - version 7
mh_compareCompare causal, shared and independent models using Bayesian...
mh_compare2Compare causal, shared and independent models using Bayesian...
qqthinPlot qq-plot from p-values with shading
rnormalmixSimulate from a normal mixture distribution
sherlock1Calculate Bayes Factor for original Sherlock
top_snps_pval_ldRank SNPs by pval, prune for LD
top_snps_pval_ld2Rank SNPs by pval, prune for LD
top_snps_pval_ld2_newRank SNPs by pval, prune for LD
jean997/sherlockAsh documentation built on April 25, 2018, 5:02 a.m.