Man pages for jean997/sherlockAsh
CAUSE: Causal Analysis Using Summary Effect Estimates

cause_grid_approxCAUSE with grid approximation and fixed rho
cause_grid_approx_v7CAUSE with grid approximation and fixed rho
cause_mh_v7Estimate posteriors for version 7 model
fit_causeFit CAUE
get_mapTry to find the MAP using coordinate descent
get_map_oldTry to find the MAP using coordinate descent
in_sample_elpd_looEstimate delta elpd for pairs of models
ld_prune_pval_format3Rank SNPs by pval, prune for LD
ld_prune_pval_format4Rank SNPs by pval, prune for LD
ll_v4Calculate likelihood - version 4
ll_v4_ijCalculate likelihood of (beta_hat_1[j], beta_hat_2[j])) given...
ll_v4_looCalculate likelihood matrix for LOO (SNPs by posterior...
ll_v4_matCalculate likelihood matrix - version 4
ll_v4_singleCalculate likelihood - version 4, not in parallel
ll_v6Calculate likelihood - version 6
ll_v6_ijCalculate likelihood of (beta_hat_1[j] beta_hat_2(j)) given...
ll_v6_matCalculate likelihood matrix - version 6
ll_v7Calculate likelihood - version 7
ll_v7_ijCalculate likelihood of (beta_hat_1[j], beta_hat_2[j])) given...
ll_v7_looCalculate likelihood matrix for LOO (SNPs by posterior...
ll_v7_matCalculate likelihood matrix - version 7
ll_v7_samps_Z0Calculate likelihood matrix for LOO (SNPs by posterior...
ll_v7_samps_Z1Calculate likelihood matrix for LOO (SNPs by posterior...
map_pi_rhoTry to find the MAP for pi and rho using coordinate descent
qqthinPlot qq-plot from p-values with shading
rnormalmixSimulate from a normal mixture distribution
sherlock1Calculate Bayes Factor for original Sherlock
sherlockAshsherlockAsh
simulate_summary_statisticsSimulate summary statistics
top_snps_pval_ldRank SNPs by pval, prune for LD
top_snps_pval_ld2Rank SNPs by pval, prune for LD
top_snps_pval_ld2_newRank SNPs by pval, prune for LD
jean997/sherlockAsh documentation built on Oct. 6, 2018, 3:14 p.m.