jeffbhasin/goldmine: goldmine: Genomic context annotation for any set of genomic ranges using UCSC Genome Browser tables

Goldmine obtains data by direct downloading and updating of a local mirror of select UCSC Genome Browser annotation tables. The R package contains functions to assess genomic context of any given set of genomic ranges by performing overlaps with regions of annotated genomic features and produce long, short, and plot outputs. There are also functions for performing enrichment testing by drawing background sets matched for multiple variables (i.e., length, CpG density, etc).

Getting started

Package details

AuthorJeffrey Bhasin <[email protected]>
MaintainerJeffrey Bhasin <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jeffbhasin/goldmine documentation built on July 20, 2018, 9:30 a.m.