writeBEDFromGRanges: Write a BED format file from a GenomicRanges object
In jeffbhasin/goldmine: goldmine: Genomic context annotation for any set of genomic ranges using UCSC Genome Browser tables
Description
Creates BED file suitable for upload as a custom track to the UCSC genome browser. Note that start coordinates are 0-based in the BED format.
Usage
1
writeBEDFromGRanges(gr, file, name = NULL)
Arguments
gr
A GenomicRanges object.
file
Filename of the BED file to write.
name
Column name to use for the name field in the BED file (optional)
jeffbhasin/goldmine documentation built on Nov. 13, 2019, 9:11 a.m.
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Description
Creates BED file suitable for upload as a custom track to the UCSC genome browser. Note that start coordinates are 0-based in the BED format.
Usage
1 | writeBEDFromGRanges(gr, file, name = NULL)
|
Arguments
gr |
A GenomicRanges object. |
file |
Filename of the BED file to write. |
name |
Column name to use for the name field in the BED file (optional) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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