API for jeffbhasin/goldmine
goldmine: Genomic context annotation for any set of genomic ranges using UCSC Genome Browser tables

Global functions
addGenes Man page Source code
addNearest Man page Source code
calcOverlapForReport Source code
calcOverlapForReportExons Source code
calcPercentOverlap Source code
drawGenomePool Man page Source code
get3primeUTROverlap Source code
getBrowserURLs Source code
getCpgFeatures Man page Source code
getDistTSE Source code
getDistTSECenter Source code
getDistTSS Source code
getDistTSSCenter Source code
getDownstreamOverlap Source code
getExonOverlap Source code
getFeatures Man page Source code
getFreqCpG Source code
getGeneModels Man page Source code
getGenes Man page Source code
getGenicOverlap Source code
getGenicOverlapGenes Source code
getRepeatPercent Source code
getRepeatPercentFast Source code
getTableHeaderFromSQL Source code
getUCSCTable Man page Source code
getUpstreamOverlap Source code
ggnice Man page Source code
gmWrite Man page Source code
goldmine Man page Source code
goldmine-package Man page
makeDT Man page Source code
makeGRanges Man page Source code
parseExons Source code
read.table.ucsc Source code
read.table.ucsc.big Source code
readRepeatMasker Source code
readUCSCAnnotation Man page Source code
sortDT Man page Source code
sortGRanges Man page Source code
syncUCSCTable Source code
writeBEDFromGRanges Man page Source code
jeffbhasin/goldmine documentation built on May 17, 2017, 3:58 p.m.