addNearest: Add columns to query with distance to nearest subject and...
In jeffbhasin/goldmine: goldmine: Genomic context annotation for any set of genomic ranges using UCSC Genome Browser tables
Description
Add columns to query with distance to nearest subject and subject id(s)
Usage
1
addNearest(query, subject, id = "name", prefix = "subject")
Arguments
query
Genomic regions to find nearest genes for as a GRanges, data.frame, or data.table with the columns "chr", "start", and "end"
id
Column name of the id field in subject to report as the nearest id(s). In case of ties, a comma separated list will be returned.
prefix
Append this string to names of the added columns
query
Genomic regions to find nearest genes for as a GRanges, data.frame, or data.table with the columns "chr", "start", and "end"
jeffbhasin/goldmine documentation built on Nov. 13, 2019, 9:11 a.m.
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Description
Add columns to query with distance to nearest subject and subject id(s)
Usage
1 | addNearest(query, subject, id = "name", prefix = "subject")
|
Arguments
query |
Genomic regions to find nearest genes for as a GRanges, data.frame, or data.table with the columns "chr", "start", and "end" |
id |
Column name of the id field in subject to report as the nearest id(s). In case of ties, a comma separated list will be returned. |
prefix |
Append this string to names of the added columns |
query |
Genomic regions to find nearest genes for as a GRanges, data.frame, or data.table with the columns "chr", "start", and "end" |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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