makeGRanges: Make a GRanges from a data.frame or data.table with the...
In jeffbhasin/goldmine: goldmine: Genomic context annotation for any set of genomic ranges using UCSC Genome Browser tables
Description
Usage
Arguments
Value
Description
Given a data.frame or data.table with the columns "chr", "start", and "end", a GenomicRanges (GRanges) object will be created. All other columns will be passed on as metadata. If the input is already a GRanges, it is simply returned. If the column "strand" exists, it will be set as the strand.
Usage
1
makeGRanges(obj, strand = F)
Arguments
obj
A data.frame or data.table with columns "chr", "start", and "end" and any other columns
strand
Use the information in the "strand" column to set strand in the GRanges, if it is present.
Value
A GRanges made from the data in obj.
jeffbhasin/goldmine documentation built on Nov. 13, 2019, 9:11 a.m.
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Description Usage Arguments Value
Description
Given a data.frame or data.table with the columns "chr", "start", and "end", a GenomicRanges (GRanges) object will be created. All other columns will be passed on as metadata. If the input is already a GRanges, it is simply returned. If the column "strand" exists, it will be set as the strand.
Usage
1 | makeGRanges(obj, strand = F)
|
Arguments
obj |
A data.frame or data.table with columns "chr", "start", and "end" and any other columns |
strand |
Use the information in the "strand" column to set strand in the GRanges, if it is present. |
Value
A GRanges made from the data in obj.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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