API for jeffbhasin/goldmine
goldmine: Genomic context annotation for any set of genomic ranges using UCSC Genome Browser tables
| Global functions | |
|---|---|
| addGenes | Man page Source code |
| addNearest | Man page Source code |
| calcOverlapForReport | Source code |
| calcOverlapForReportExons | Source code |
| calcPercentOverlap | Source code |
| drawGenomePool | Man page Source code |
| get3primeUTROverlap | Source code |
| getBrowserURLs | Source code |
| getCpgFeatures | Man page Source code |
| getDistTSE | Source code |
| getDistTSECenter | Source code |
| getDistTSS | Source code |
| getDistTSSCenter | Source code |
| getDownstreamOverlap | Source code |
| getExonOverlap | Source code |
| getFeatures | Man page Source code |
| getFreqCpG | Source code |
| getGeneModels | Man page Source code |
| getGenes | Man page Source code |
| getGenicOverlap | Source code |
| getGenicOverlapGenes | Source code |
| getRepeatPercent | Source code |
| getRepeatPercentFast | Source code |
| getTableHeaderFromSQL | Source code |
| getUCSCTable | Man page Source code |
| getUpstreamOverlap | Source code |
| ggnice | Man page Source code |
| gmWrite | Man page Source code |
| goldmine | Man page Source code |
| goldmine-package | Man page |
| makeDT | Man page Source code |
| makeGRanges | Man page Source code |
| parseExons | Source code |
| read.table.ucsc | Source code |
| read.table.ucsc.big | Source code |
| readRepeatMasker | Source code |
| readUCSCAnnotation | Man page Source code |
| sortDT | Man page Source code |
| sortGRanges | Man page Source code |
| syncUCSCTable | Source code |
| writeBEDFromGRanges | Man page Source code |
