Man pages for jeffbhasin/methylaction
MethylAction: Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
| getCounts | Produce a GRanges with counts of overlapping reads for a set... |
| getReads | Store GenomicRanges of BAM reads in a list |
| maBed | Write BED file of DMR regions |
| maHeatmap | Heatmap of the differentially methylated regions (DMRs) found... |
| maKaryogram | Karyogram of the differentially methylated regions (DMRs)... |
| maPerm | Permute or Bootstrap DMR Detection |
| maPermFdr | Compute false discovery rates (FDRs) from permuted DMR lists |
| maPermMerge | Merge permutations generated and saved by maPerm() |
| maSummary | Summary stats for a run of methylaction() |
| maTracks | Write BED and BIGWIG files for normalized, filter-passed... |
| methylaction | Detect differentially methylated regions (DMRs) from windowed... |
| methylaction-package | MethylAction: Differentially Methylated Regions (DMRs) from... |
| readSampleInfo | Load a CSV containing required information about each sample |
