maPermMerge: Merge permutations generated and saved by maPerm()
In jeffbhasin/methylaction: MethylAction: Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
Description
Usage
Arguments
Value
Description
The function maPerm() with save=TRUE will save permutations into RData files. Move all these RData files into the same directory, and indicate this directory using "dir". The output from maPermMerge() will be a list of DMRs detected in all permutations, and can be given to maPermFdr() to compute false discovery rates (FDRs).
Usage
1
maPermMerge(dir = ".")
Arguments
dir
Directory containing RData files saved by maPerm() where save was equal to TRUE
Value
A list of DMRs arising from each permutation or bootstrap, merged across all the detected RData files.
jeffbhasin/methylaction documentation built on May 19, 2019, 1:46 a.m.
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Description Usage Arguments Value
Description
The function maPerm() with save=TRUE will save permutations into RData files. Move all these RData files into the same directory, and indicate this directory using "dir". The output from maPermMerge() will be a list of DMRs detected in all permutations, and can be given to maPermFdr() to compute false discovery rates (FDRs).
Usage
1 | maPermMerge(dir = ".")
|
Arguments
dir |
Directory containing RData files saved by maPerm() where save was equal to TRUE |
Value
A list of DMRs arising from each permutation or bootstrap, merged across all the detected RData files.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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