maPermMerge: Merge permutations generated and saved by maPerm()

Description Usage Arguments Value

View source: R/perms.r

Description

The function maPerm() with save=TRUE will save permutations into RData files. Move all these RData files into the same directory, and indicate this directory using "dir". The output from maPermMerge() will be a list of DMRs detected in all permutations, and can be given to maPermFdr() to compute false discovery rates (FDRs).

Usage

1

Arguments

dir

Directory containing RData files saved by maPerm() where save was equal to TRUE

Value

A list of DMRs arising from each permutation or bootstrap, merged across all the detected RData files.


jeffbhasin/methylaction documentation built on May 17, 2017, 3:59 p.m.