maPermFdr: Compute false discovery rates (FDRs) from permuted DMR lists

Description Usage Arguments Value

View source: R/perms.r

Description

Using DMRs arising from permutations saved using maPerm(), compute FDRs for each pattern.

Usage

1
maPermFdr(ma, maperm, recut.p = 0.05, wide = FALSE)

Arguments

ma

Output object from methylaction()

maperm

Output object from maPerm()

recut.p

ANODEV p-value cutoff to use

wide

Produce a more readable "wide" format summary table, sorted by "frequent" FDR

Value

A table of FDRs for each pattern, stratified by "frequent" status


jeffbhasin/methylaction documentation built on May 17, 2017, 3:59 p.m.