maHeatmap: Heatmap of the differentially methylated regions (DMRs) found...

Description Usage Arguments Value

View source: R/reporting.r

Description

Will plot a heatmap of the DMRs based on the normalized read counts. The square root of the mean per-window normalized read count is used so DMRs of different lengths are comparable.

Usage

1
maHeatmap(ma, frequentonly = TRUE, bias = 2, file = NULL)

Arguments

ma

Output object from methylaction()

frequentonly

Only plot for DMRs where "frequent" is TRUE

bias

Bias setting for the color scale

file

Where to save the image (PNG format), if NULL, will print to current graphics device

Value

Saves plot to disk or outputs to graphics device


jeffbhasin/methylaction documentation built on May 17, 2017, 3:59 p.m.