maHeatmap: Heatmap of the differentially methylated regions (DMRs) found...
In jeffbhasin/methylaction: MethylAction: Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
Description
Usage
Arguments
Value
Description
Will plot a heatmap of the DMRs based on the normalized read counts. The square root of the mean per-window normalized read count is used so DMRs of different lengths are comparable.
Usage
1
Arguments
ma
Output object from methylaction()
frequentonly
Only plot for DMRs where "frequent" is TRUE
bias
Bias setting for the color scale
file
Where to save the image (PNG format), if NULL, will print to current graphics device
Value
Saves plot to disk or outputs to graphics device
jeffbhasin/methylaction documentation built on May 19, 2019, 1:46 a.m.
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Description Usage Arguments Value
Description
Will plot a heatmap of the DMRs based on the normalized read counts. The square root of the mean per-window normalized read count is used so DMRs of different lengths are comparable.
Usage
1 |
Arguments
ma |
Output object from methylaction() |
frequentonly |
Only plot for DMRs where "frequent" is TRUE |
bias |
Bias setting for the color scale |
file |
Where to save the image (PNG format), if NULL, will print to current graphics device |
Value
Saves plot to disk or outputs to graphics device
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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