Man pages for jeffbhasin/methylaction
MethylAction: Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)

getCountsProduce a GRanges with counts of overlapping reads for a set...
getReadsStore GenomicRanges of BAM reads in a list
maBedWrite BED file of DMR regions
maHeatmapHeatmap of the differentially methylated regions (DMRs) found...
maKaryogramKaryogram of the differentially methylated regions (DMRs)...
maPermPermute or Bootstrap DMR Detection
maPermFdrCompute false discovery rates (FDRs) from permuted DMR lists
maPermMergeMerge permutations generated and saved by maPerm()
maSummarySummary stats for a run of methylaction()
maTracksWrite BED and BIGWIG files for normalized, filter-passed...
methylactionDetect differentially methylated regions (DMRs) from windowed...
methylaction-packageMethylAction: Differentially Methylated Regions (DMRs) from...
readSampleInfoLoad a CSV containing required information about each sample
jeffbhasin/methylaction documentation built on May 17, 2017, 3:59 p.m.