getCounts | Produce a GRanges with counts of overlapping reads for a set... |
getReads | Store GenomicRanges of BAM reads in a list |
maBed | Write BED file of DMR regions |
maHeatmap | Heatmap of the differentially methylated regions (DMRs) found... |
maKaryogram | Karyogram of the differentially methylated regions (DMRs)... |
maPerm | Permute or Bootstrap DMR Detection |
maPermFdr | Compute false discovery rates (FDRs) from permuted DMR lists |
maPermMerge | Merge permutations generated and saved by maPerm() |
maSummary | Summary stats for a run of methylaction() |
maTracks | Write BED and BIGWIG files for normalized, filter-passed... |
methylaction | Detect differentially methylated regions (DMRs) from windowed... |
methylaction-package | MethylAction: Differentially Methylated Regions (DMRs) from... |
readSampleInfo | Load a CSV containing required information about each sample |
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