|getCounts||Produce a GRanges with counts of overlapping reads for a set...|
|getReads||Store GenomicRanges of BAM reads in a list|
|maBed||Write BED file of DMR regions|
|maHeatmap||Heatmap of the differentially methylated regions (DMRs) found...|
|maKaryogram||Karyogram of the differentially methylated regions (DMRs)...|
|maPerm||Permute or Bootstrap DMR Detection|
|maPermFdr||Compute false discovery rates (FDRs) from permuted DMR lists|
|maPermMerge||Merge permutations generated and saved by maPerm()|
|maSummary||Summary stats for a run of methylaction()|
|maTracks||Write BED and BIGWIG files for normalized, filter-passed...|
|methylaction||Detect differentially methylated regions (DMRs) from windowed...|
|methylaction-package||MethylAction: Differentially Methylated Regions (DMRs) from...|
|readSampleInfo||Load a CSV containing required information about each sample|
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