maKaryogram: Karyogram of the differentially methylated regions (DMRs)...
In jeffbhasin/methylaction: MethylAction: Differentially Methylated Regions (DMRs) from MBD-isolated Genome Sequencing (MiGS/MBD-seq)
Description
Usage
Arguments
Value
Description
Will plot a karyogram of the DMRs. A black line above shows regions of coverage by the sequencing experiment.
Usage
1
2
Arguments
ma
Output object from methylaction()
reads
Preprocessed reads/fragments data from getReads()
frequentonly
Only plot for DMRs where "frequent" is TRUE
patt
Character vector of patterns to restrict plot to
colors
Character vector of custom colors (as hex codes) for each pattern in patt
file
Where to save the image (PDF format), if NULL, will print to current graphics device
Value
Saves plot to disk or outputs to graphics device
jeffbhasin/methylaction documentation built on May 19, 2019, 1:46 a.m.
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Description Usage Arguments Value
Description
Will plot a karyogram of the DMRs. A black line above shows regions of coverage by the sequencing experiment.
Usage
1 2 |
Arguments
ma |
Output object from methylaction() |
reads |
Preprocessed reads/fragments data from getReads() |
frequentonly |
Only plot for DMRs where "frequent" is TRUE |
patt |
Character vector of patterns to restrict plot to |
colors |
Character vector of custom colors (as hex codes) for each pattern in patt |
file |
Where to save the image (PDF format), if NULL, will print to current graphics device |
Value
Saves plot to disk or outputs to graphics device
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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