hill_12I: Calculate Hill numbers of order 1, 2, and Inf from a matrix
In jeffkimbrel/MappgeneSummary: Summarize Mappgene SNV Data
hill_12I R Documentation
Calculate Hill numbers of order 1, 2, and Inf from a matrix
Description
For both Hill 1 and 2, a maximally variant site will have a value of n
(which is 4 for the 4 possible nucleotides), and maximally invariant site is
1.
Usage
hill_12I(x)
Arguments
x
a matrix with nrows samples and ncol counts
Details
log(N_1) is entropy, log(N_2) is inverse Simpson's
Value
a data.frame with Hill's N_1, N_2, N_Inf for each sample
jeffkimbrel/MappgeneSummary documentation built on Dec. 24, 2024, 3:12 p.m.
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| hill_12I | R Documentation |
Calculate Hill numbers of order 1, 2, and Inf from a matrix
Description
For both Hill 1 and 2, a maximally variant site will have a value of n
(which is 4 for the 4 possible nucleotides), and maximally invariant site is
1.
Usage
hill_12I(x)
Arguments
x |
a matrix with nrows samples and ncol counts |
Details
log(N_1) is entropy, log(N_2) is inverse Simpson's
Value
a data.frame with Hill's N_1, N_2, N_Inf for each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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