read_mappgene_data: Load the mappgene data into a tibble

In jeffkimbrel/MappgeneSummary: Summarize Mappgene SNV Data

Load the mappgene data into a tibble

Description

Load the mappgene data into a tibble

Usage

read_mappgene_data(
  path,
  workflow = c("ivar", "lofreq"),
  sample_cleanup = "LLNL_"
)

Arguments

path	The path to the folder with the .ivar.snpSIFT.txt and .ivar.lofreq.snpSIFT.txt files.
workflow	The mappgene workflow type(s). Accepts a single string, or a vector of both "ivar" and "lofreq".
sample_cleanup	Additional text to remove from the sample names.

jeffkimbrel/MappgeneSummary documentation built on Dec. 24, 2024, 3:12 p.m.