plot_heatmap: Plot Heatmap of Specific Gene

In jeffkimbrel/MappgeneSummary: Summarize Mappgene SNV Data

Plot Heatmap of Specific Gene

Description

If working with a lot of data it is recommended to filter your df first, and then pass it into the plot_heatmap() function

Usage

plot_heatmap(df, columns = "SAMPLE", rows = "SNV", na.value = 0)

Arguments

df	A tibble or dataframe from one of the get outbreak functions
columns	The column name from df to use as columns in the heatmap
rows	The column name from df to use as rows in the heatmap
na.value	The numerical value to set the NA values to. Changing this (from 0 to -1) can affect the "chaining" effect of clustering.

jeffkimbrel/MappgeneSummary documentation built on Dec. 24, 2024, 3:12 p.m.