Man pages for jelber2/rGO2TR
Filters NCBI Annotated Eukaryotic Genomes by Gene Ontology.
| create.maker.target.region | Filters Granges object by retained mRNA list to create MAKER... |
| create.target.region | Filters Granges object by retained mRNA list to create target... |
| download.goanna.results | Download results from GOanna website. |
| efetch2 | Retrieve Entrez database records at NCBI in a variety of... |
| filter.gff3 | Filters a GRange object by desired annotation source. |
| filter.maker.gff3 | Filters a GRange object created from MAKER by desired... |
| filter.mRNA.GO.list | Filters mRNA-GO list by GO id list to create Retained mRNA... |
| get.gff3 | Downloads the desired gff3 gene annotation file. |
| get.maker.mRNA.acc | Gets mRNA accession identifiers from MAKER derived Granges... |
| get.maker.mRNA.translated | Get translated sequences in FASTA format from MAKER mRNA... |
| get.mRNA.acc | Gets mRNA accession identifiers from desired Granges object. |
| get.mRNA.translated | Get translated sequences in FASTA format from mRNA accession... |
| get.ncbi.annot.euk.genomes | Parse genomes annotated by NCBI Eukaryotic Genome Annotation... |
| make.mRNA.GO.list | Makes mRNA-GO.list |
| read.maker.gff3 | Reads a MAKER create gff3 file into R. |
| rGO2TR | rGO2TR: filters NCBI Annotated Eukaryotic Genomes by gene... |
| save.target.region.as.bed.file | Saves final.target.region as a bed file |
| search.annot.euks | Searches Genomes Annotated by NCBI Eukaryotic Genome... |
| upload.fasta.to.goanna | Upload protein FASTA files to GOanna website. |
