efetch2: Retrieve Entrez database records at NCBI in a variety of...

In jelber2/rGO2TR: Filters NCBI Annotated Eukaryotic Genomes by Gene Ontology.

Retrieve Entrez database records at NCBI in a variety of formats code from Chris Stubben's genomes2 package modified by Jean Elbers https://github.com/cstubben/genomes2/blob/master/R/efetch.R

Description

Retrieve Entrez database records at NCBI in a variety of formats code from Chris Stubben's genomes2 package modified by Jean Elbers https://github.com/cstubben/genomes2/blob/master/R/efetch.R

Usage

efetch2(id, db = "pubmed", rettype = "", retmode = "text",
  showURL = FALSE, destfile, ...)

Arguments

id	An EntrezHistory object or vector of Ids
db	An Entrez database, default pubmed
rettype	Retrieval type, see note for details
retmode	Retrieval mode, see note for details
showURL	display URL string
destfile	location to save downloaded file using download.file. If missing, the url is loaded into R using readLines
...	Other key-value pairs passed to the efetch url string, e.g seq_stop

Value

Returns efetch query

Examples

efetch.out <- efetch2(input.R.object.split[[i]], "nucleotide", "gb", "xml")

jelber2/rGO2TR documentation built on Sept. 8, 2024, 9 p.m.