upload.fasta.to.goanna: Upload protein FASTA files to GOanna website.

In jelber2/rGO2TR: Filters NCBI Annotated Eukaryotic Genomes by Gene Ontology.

Upload protein FASTA files to GOanna website.

Description

Upload protein FASTA files to GOanna website.

Usage

upload.fasta.to.goanna(email.address, file.to.upload, expected.value,
  word.size, max.target.sequences, percent.identity, query.coverage)

Arguments

email.address	Email address to send the output of GOanna as a string
file.to.upload	Path to protein FASTA file to upload to GOanna as a string
expected.value	Expected value or evalue for BLAST search as a string
word.size	Word size for the BLAST search as a string
max.target.sequences	Maximum number of target sequences for BLAST search
percent.identity	Percent Identity of the BLAST search as a string
query.coverage	Query coverage of BLAST search as a string

Value

results = a status of the GOanna webpage request

Examples

result <- upload.fasta.to.goanna(email.address ="email",
                       file.to.upload = "sparrow.mRNA1.fasta",
                       expected.value = "10e-20",
                       word.size = "3",
                       max.target.sequences = "3",
                       percent.identity = "20",
                       query.coverage = "20")

jelber2/rGO2TR documentation built on Sept. 8, 2024, 9 p.m.