View source: R/upload.fasta.to.goanna.R
upload.fasta.to.goanna | R Documentation |
Upload protein FASTA files to GOanna website.
upload.fasta.to.goanna(email.address, file.to.upload, expected.value,
word.size, max.target.sequences, percent.identity, query.coverage)
email.address |
Email address to send the output of GOanna as a string |
file.to.upload |
Path to protein FASTA file to upload to GOanna as a string |
expected.value |
Expected value or evalue for BLAST search as a string |
word.size |
Word size for the BLAST search as a string |
max.target.sequences |
Maximum number of target sequences for BLAST search |
percent.identity |
Percent Identity of the BLAST search as a string |
query.coverage |
Query coverage of BLAST search as a string |
results = a status of the GOanna webpage request
result <- upload.fasta.to.goanna(email.address ="email",
file.to.upload = "sparrow.mRNA1.fasta",
expected.value = "10e-20",
word.size = "3",
max.target.sequences = "3",
percent.identity = "20",
query.coverage = "20")
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.