get.mRNA.translated: Get translated sequences in FASTA format from mRNA accession...
In jelber2/rGO2TR: Filters NCBI Annotated Eukaryotic Genomes by Gene Ontology.

get.mRNA.translated

R Documentation

Get translated sequences in FASTA format from mRNA accession identifier input.

Description

Get translated sequences in FASTA format from mRNA accession identifier input.

Usage

get.mRNA.translated(input.R.object, output.R.object, email.address,
  output.file.name)

Arguments

`input.R.object`	Name of R object containing mRNA accessions
`output.R.object`	Name of R object to contain mRNA translated sequences
`email.address`	Your email address
`output.file.name`	Desired name of the output fasta file

Value

An R object containing mRNA translated sequences

Examples

mRNA1.translated <- get.mRNA.translated(mRNA1.acc,
                                      mRNA1.translated,
                                     "jelber2@lsu.edu",
                                     "sparrow.mRNA1.fasta")
mRNA2.translated <- get.mRNA.translated(mRNA2.acc,
                                      mRNA2.translated,
                                     "jelber2@lsu.edu",
                                     "sparrow.mRNA2.fasta")

jelber2/rGO2TR documentation built on Sept. 8, 2024, 9 p.m.