Man pages for jelber2/rGO2TR
Filters NCBI Annotated Eukaryotic Genomes by Gene Ontology.

create.maker.target.regionFilters Granges object by retained mRNA list to create MAKER...
create.target.regionFilters Granges object by retained mRNA list to create target...
download.goanna.resultsDownload results from GOanna website.
efetch2Retrieve Entrez database records at NCBI in a variety of...
filter.gff3Filters a GRange object by desired annotation source.
filter.maker.gff3Filters a GRange object created from MAKER by desired...
filter.mRNA.GO.listFilters mRNA-GO list by GO id list to create Retained mRNA...
get.gff3Downloads the desired gff3 gene annotation file.
get.maker.mRNA.accGets mRNA accession identifiers from MAKER derived Granges...
get.maker.mRNA.translatedGet translated sequences in FASTA format from MAKER mRNA...
get.mRNA.accGets mRNA accession identifiers from desired Granges object.
get.mRNA.translatedGet translated sequences in FASTA format from mRNA accession...
get.ncbi.annot.euk.genomesParse genomes annotated by NCBI Eukaryotic Genome Annotation...
make.mRNA.GO.listMakes mRNA-GO.list
read.maker.gff3Reads a MAKER create gff3 file into R.
rGO2TRrGO2TR: filters NCBI Annotated Eukaryotic Genomes by gene...
save.target.region.as.bed.fileSaves final.target.region as a bed file
search.annot.euksSearches Genomes Annotated by NCBI Eukaryotic Genome...
upload.fasta.to.goannaUpload protein FASTA files to GOanna website.
jelber2/rGO2TR documentation built on April 3, 2018, 1:37 a.m.