View source: R/get.maker.mRNA.translated.R
get.maker.mRNA.translated | R Documentation |
Get translated sequences in FASTA format from MAKER mRNA accession identifier input.
get.maker.mRNA.translated(input.R.object, output.R.object, input.file.name,
output.file.name)
input.R.object |
Name of R object containing mRNA accessions |
output.R.object |
Name of R object to contain mRNA translated sequences |
input.file.name |
Name of file with translated proteins sequences |
output.file.name |
Desired name of the output fasta file |
An R object containing mRNA translated sequences
mRNA1.translated <- get.maker.mRNA.translated(mRNA1.acc,
mRNA1.translated,
"maker.translated.fasta",
"sparrow.mRNA1.translated.fasta")
mRNA2.translated <- get.maker.mRNA.translated(mRNA2.acc,
mRNA2.translated,
"maker.translated.fasta",
"sparrow.mRNA2.translated.fasta")
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