get.maker.mRNA.translated: Get translated sequences in FASTA format from MAKER mRNA...

View source: R/get.maker.mRNA.translated.R

get.maker.mRNA.translatedR Documentation

Get translated sequences in FASTA format from MAKER mRNA accession identifier input.

Description

Get translated sequences in FASTA format from MAKER mRNA accession identifier input.

Usage

get.maker.mRNA.translated(input.R.object, output.R.object, input.file.name,
  output.file.name)

Arguments

input.R.object

Name of R object containing mRNA accessions

output.R.object

Name of R object to contain mRNA translated sequences

input.file.name

Name of file with translated proteins sequences

output.file.name

Desired name of the output fasta file

Value

An R object containing mRNA translated sequences

Examples

mRNA1.translated <- get.maker.mRNA.translated(mRNA1.acc,
                                              mRNA1.translated,
                                              "maker.translated.fasta",
                                              "sparrow.mRNA1.translated.fasta")
mRNA2.translated <- get.maker.mRNA.translated(mRNA2.acc,
                                              mRNA2.translated,
                                              "maker.translated.fasta",
                                              "sparrow.mRNA2.translated.fasta")

jelber2/rGO2TR documentation built on Feb. 22, 2024, 12:50 p.m.