gene1: Example Gene 1 This is a genetic distance matrix of SNPs for...

In jennahamlin/Tinsel: An R Shiny Application for annotating outbreak phylogenetic trees

Description

Example Gene 1

This is a genetic distance matrix of SNPs for 19 isolates of Salmonella enterica to be used with the Newick phylogenetic tree (example tree 1) and the optional meta data file (example meta 1).

Usage

data(gene1)

Format

An object of class spec_tbl_df (inherits from tbl_df, tbl, data.frame) with 16 rows and 17 columns.

Examples

data(gene1)
#convert to three column tibble by  label column and remove self comparisons
gene1 <- gene1 %>% dplyr::rename( label = 1) %>%
 tidyr::pivot_longer(-label )%>%
 .[which(.$label != .$name),] %>%
 dplyr::mutate(value=ifelse(value=="-", 0,value))

jennahamlin/Tinsel documentation built on Sept. 15, 2021, 9:46 a.m.