mod_tipCheck: mod_tipCheck_ui mod_tipCheck_server

In jennahamlin/Tinsel: An R Shiny Application for annotating outbreak phylogenetic trees

Description

A shiny Module. This module generates messages for the user regarding the files uploaded and if column(s) for a heatmap is available. This module contains 3 functions located in the golem_utils_server file (sanity, not_columns, and m_file_conversion). Essentially. these functions are used for checking or converting files for downstream analyses.

Usage

mod_tipCheck_ui(id)

mod_tipCheck_server(
  input,
  output,
  session,
  meta_file_out,
  m_file_out,
  gene_file_out,
  g_file_out,
  t_file_out,
  tree_file_out
)

Arguments

id, input, output, session	internal
meta_file_out	used to confirm that file is uploaded; on/off
m_file_out	meta data that is read in used file for tip checking
gene_file_out	used to confirm that file is uploaded; on/off
g_file_out	gene data that is read in used for tip checking
t_file_out	tree data that is read in for tip checking
tree_file_out	used to confirm that file is uploaded; on/off

Details

tipCheck Function

jennahamlin/Tinsel documentation built on Sept. 15, 2021, 9:46 a.m.