Files in jennahamlin/Tinsel
An R Shiny Application for annotating outbreak phylogenetic trees
.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/documentation.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/pull_request_template.md
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/app_config.R
R/app_server.R
R/app_ui.R
R/gene1.R
R/gene2.R
R/gene3.R
R/golem_utils_server.R
R/golem_utils_ui.R
R/meta1.R
R/meta2.R
R/meta3.R
R/mod_FAQ.R
R/mod_about.R
R/mod_aboutExample.R
R/mod_aboutTreeParams.R
R/mod_cladeAnnotator.R
R/mod_displayTree.R
R/mod_downloadImage.R
R/mod_exampleData.R
R/mod_paramsTree.R
R/mod_pushButtons.R
R/mod_relaunchApp.R
R/mod_tipCheck.R
R/mod_uploadData.R
R/mod_uploadData_fct_readData.R
R/run_app.R
R/tinselR.R
R/tree1.R
R/tree2.R
R/tree3.R
R/utils-pipe.R
README.md
Tinsel.Rproj
_pkgdown.yml
app.R
data/.gitignore
data/gene1.rda
data/gene2.rda
data/gene3.rda
data/meta1.rda
data/meta2.rda
data/meta3.rda
data/tree1.rda
data/tree2.rda
data/tree3.rda
dev/01_start.R
dev/02_dev.R
dev/03_deploy.R
dev/run_dev.R
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/Slide1.PNG
docs/articles/Slide1.SVG
docs/articles/Slide10.PNG
docs/articles/Slide2.PNG
docs/articles/Slide2.SVG
docs/articles/Slide3.PNG
docs/articles/Slide3.SVG
docs/articles/Slide4.PNG
docs/articles/Slide4.SVG
docs/articles/Slide5.PNG
docs/articles/Slide5.SVG
docs/articles/Slide6.PNG
docs/articles/Slide7.PNG
docs/articles/Slide7.SVG
docs/articles/Slide8.PNG
docs/articles/Slide8.SVG
docs/articles/Slide9.PNG
docs/articles/Slide9.SVG
docs/articles/geneDistanceExample.PNG
docs/articles/index.html
docs/articles/metaDataExample.PNG
docs/articles/tinselR.html
docs/articles/tinselR_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/tinselR_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/articles/tinselR_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/bootstrap.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/articles/tinselR_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/cerulean.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/cosmo.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/darkly.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/flatly.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/css/journal.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/lumen.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/paper.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/readable.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/sandstone.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/simplex.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/spacelab.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/united.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/css/yeti.min.css
docs/articles/tinselR_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/articles/tinselR_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/articles/tinselR_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/articles/tinselR_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/articles/tinselR_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/articles/tinselR_files/bootstrap-3.3.5/js/bootstrap.js
docs/articles/tinselR_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/articles/tinselR_files/bootstrap-3.3.5/js/npm.js
docs/articles/tinselR_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/articles/tinselR_files/bootstrap-3.3.5/shim/respond.min.js
docs/articles/tinselR_files/jquery-1.11.3/jquery.min.js
docs/articles/tinselR_files/jqueryui-1.11.4/README
docs/articles/tinselR_files/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
docs/articles/tinselR_files/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
docs/articles/tinselR_files/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
docs/articles/tinselR_files/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
docs/articles/tinselR_files/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
docs/articles/tinselR_files/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
docs/articles/tinselR_files/jqueryui-1.11.4/index.html
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.css
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.js
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.min.css
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.min.js
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.structure.css
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.structure.min.css
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.theme.css
docs/articles/tinselR_files/jqueryui-1.11.4/jquery-ui.theme.min.css
docs/articles/tinselR_files/navigation-1.1/codefolding.js
docs/articles/tinselR_files/navigation-1.1/sourceembed.js
docs/articles/tinselR_files/navigation-1.1/tabsets.js
docs/articles/tinselR_files/tocify-1.9.1/jquery.tocify.css
docs/articles/tinselR_files/tocify-1.9.1/jquery.tocify.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/pull_request_template.html
docs/reference/Rplot001.png
docs/reference/figures/Slide1.PNG
docs/reference/figures/Slide2.PNG
docs/reference/figures/Slide3.PNG
docs/reference/figures/Slide4.PNG
docs/reference/figures/Slide5.PNG
docs/reference/figures/Slide6.PNG
docs/reference/figures/Slide7.PNG
docs/reference/figures/geneDistanceExample.PNG
docs/reference/figures/metaDataExample.PNG
docs/reference/gene1.html
docs/reference/gene2.html
docs/reference/gene3.html
docs/reference/index.html
docs/reference/meta1.html
docs/reference/meta2.html
docs/reference/meta3.html
docs/reference/mod_FAQ.html
docs/reference/mod_about.html
docs/reference/mod_aboutExample.html
docs/reference/mod_aboutTreeParams.html
docs/reference/mod_cladeAnnotator.html
docs/reference/mod_displayTree.html
docs/reference/mod_downloadImage.html
docs/reference/mod_exampleData.html
docs/reference/mod_paramsTree.html
docs/reference/mod_pushButtons.html
docs/reference/mod_relaunchApp.html
docs/reference/mod_tipCheck.html
docs/reference/mod_uploadData.html
docs/reference/pipe.html
docs/reference/read_data.html
docs/reference/run_app.html
docs/reference/tinselR.html
docs/reference/tree1.html
docs/reference/tree2.html
docs/reference/tree3-1.png
docs/reference/tree3.html
docs/sitemap.xml
favicon/android-chrome-192x192.png
favicon/android-chrome-512x512.png
favicon/apple-touch-icon.png
favicon/favicon-16x16.png
favicon/favicon-32x32.png
favicon/favicon.ico
favicon/site.webmanifest
inst/app/www/Slide1.PNG
inst/app/www/Slide2.PNG
inst/app/www/Slide3.PNG
inst/app/www/Slide4.PNG
inst/app/www/Slide5.PNG
inst/app/www/Slide8.PNG
inst/app/www/favicon.ico
inst/golem-config.yml
logo.png
man/figures/Slide1.PNG
man/figures/Slide10.PNG
man/figures/Slide2.PNG
man/figures/Slide3.PNG
man/figures/Slide4.PNG
man/figures/Slide5.PNG
man/figures/Slide6.PNG
man/figures/Slide7.PNG
man/figures/Slide8.PNG
man/figures/Slide9.PNG
man/gene1.Rd
man/gene2.Rd
man/gene3.Rd
man/meta1.Rd
man/meta2.Rd
man/meta3.Rd
man/mod_FAQ.Rd
man/mod_about.Rd
man/mod_aboutExample.Rd
man/mod_aboutTreeParams.Rd
man/mod_cladeAnnotator.Rd
man/mod_displayTree.Rd
man/mod_downloadImage.Rd
man/mod_exampleData.Rd
man/mod_paramsTree.Rd
man/mod_pushButtons.Rd
man/mod_relaunchApp.Rd
man/mod_tipCheck.Rd
man/mod_uploadData.Rd
man/pipe.Rd
man/read_data.Rd
man/run_app.Rd
man/tinselR.Rd
man/tree1.Rd
man/tree2.Rd
man/tree3.Rd
pkgdown/favicon/android-chrome-192x192.png
pkgdown/favicon/android-chrome-512x512.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
pkgdown/favicon/logo.png
pkgdown/favicon/site.webmanifest
tests/testthat.R
tests/testthat/test-appConnection.R
tests/testthat/test-inputData.R
vignettes/.gitignore
vignettes/Slide1.PNG
vignettes/Slide10.PNG
vignettes/Slide2.PNG
vignettes/Slide3.PNG
vignettes/Slide4.PNG
vignettes/Slide5.PNG
vignettes/Slide6.PNG
vignettes/Slide7.PNG
vignettes/Slide8.PNG
vignettes/Slide9.PNG
vignettes/tinselR.Rmd
